Environmental Associations with Genes May Yield Opportunities for Precision Medicine; Findings Reported at ASHG 2018 Annual Meeting

A new approach to genetic analysis finds associations between environmental factors and pharmacogenes – genes associated with a person’s response to drugs – sparking ideas for new research at the interface of population genetics and medicine. Findings were presented Thursday, October 18, at the American Society of Human Genetics (ASHG) 2018 Annual Meeting in San Diego, California (October 16-20). “Humans have developed and used pharmaceutical drugs for a few centuries, but their genes have been functioning on their own and interacting with other environmental factors for long before that,” explained presenting author Chris Gignoux (photo), PhD, of the University of Colorado Anschutz Medical Campus. Like changes in the physical environment, drugs affect the micro- environment within the body, which alters the way its cells and genes function. This suggests that genes with pharmacogenomic relevance may also be useful in studying broader correlations between genetics and environment. To explore a variety of environmental factors, Dr. Gignoux collaborated with Elena Sorokin, PhD, of Stanford University, who created a geocoded resource of over 20 climate, geographic, and ecological variables, using data from NASA, the World Wildlife Fund, and other sources. With collaborators from across the United States, they examined samples from the Population Architecture using Genomics and Epidemiology (PAGE) Study, a large initiative to highlight the utility of studying clinically and epidemiologically relevant variation in 51,698 individuals from 99 global populations. In a new type of analysis they termed an Enviro-WAS (environment-wide association study), the researchers examined 19,690 pharmacogenomically-relevant variants to identify associations between genotypes and the 20 environmental variables.
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